Variant report

Variant	rs362751
Chromosome Location	chr7:103181306-103181307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:103180767-103181903	PBDE	blood:	n/a	n/a
2	MXI1	chr7:103181067-103182108	SK-N-SH	brain:	n/a	n/a
3	RCOR1	chr7:103181162-103181470	K562	blood:	n/a	n/a
4	ATF1	chr7:103181075-103181326	K562	blood:	n/a	n/a

Variant related genes	Relation type
RELN	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12705120	1.00[AMR][1000 genomes]
rs13240456	1.00[AMR][1000 genomes]
rs17142245	1.00[AMR][1000 genomes]
rs2528860	1.00[AMR][1000 genomes]
rs2535756	1.00[EUR][1000 genomes]
rs2535758	1.00[EUR][1000 genomes]
rs2535761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2535767	1.00[EUR][1000 genomes]
rs2535775	1.00[EUR][1000 genomes]
rs2535776	1.00[EUR][1000 genomes]
rs2535779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2535780	1.00[EUR][1000 genomes]
rs2535782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2711841	1.00[EUR][1000 genomes]
rs2711855	1.00[EUR][1000 genomes]
rs2711856	1.00[EUR][1000 genomes]
rs2711857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2711858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2711859	1.00[EUR][1000 genomes]
rs2711866	1.00[EUR][1000 genomes]
rs2711868	1.00[EUR][1000 genomes]
rs2711872	1.00[EUR][1000 genomes]
rs2711880	1.00[EUR][1000 genomes]
rs28396636	1.00[EUR][1000 genomes]
rs28417002	1.00[EUR][1000 genomes]
rs2906636	1.00[AMR][1000 genomes]
rs2907932	1.00[EUR][1000 genomes]
rs2965084	1.00[AMR][1000 genomes]
rs2965096	1.00[AMR][1000 genomes]
rs3025938	0.89[YRI][hapmap]
rs362657	1.00[EUR][1000 genomes]
rs362756	0.80[YRI][hapmap]
rs362775	1.00[EUR][1000 genomes]
rs7808975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103158000-103198600	Weak transcription	Liver	Liver
2	chr7:103168400-103181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103178200-103191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103179200-103181400	Strong transcription	HepG2	liver
5	chr7:103179400-103181800	Enhancers	Fetal Brain Male	brain
6	chr7:103179400-103182000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:103179600-103181800	Enhancers	Fetal Brain Female	brain
8	chr7:103179600-103182400	Enhancers	Brain Substantia Nigra	brain
9	chr7:103179600-103182800	Enhancers	Brain Germinal Matrix	brain
10	chr7:103179800-103182200	Enhancers	Brain Anterior Caudate	brain
11	chr7:103179800-103182400	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:103179800-103182600	Enhancers	Brain Angular Gyrus	brain
13	chr7:103180000-103183400	Enhancers	Brain Hippocampus Middle	brain
14	chr7:103180400-103181600	Enhancers	Left Ventricle	heart
15	chr7:103180400-103199000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:103180800-103181800	Genic enhancers	K562	blood
17	chr7:103181000-103181600	Enhancers	Fetal Muscle Leg	muscle
18	chr7:103181000-103182000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:103181200-103181400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr7:103181200-103182200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:103181200-103182200	Enhancers	Cortex derived primary cultured neurospheres	brain

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