Variant report

Variant	rs13240456
Chromosome Location	chr7:103033573-103033574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12705120	1.00[AMR][1000 genomes]
rs17142245	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2528860	1.00[AMR][1000 genomes]
rs2535761	1.00[AMR][1000 genomes]
rs2535779	1.00[AMR][1000 genomes]
rs2535782	1.00[AMR][1000 genomes]
rs2711857	1.00[AMR][1000 genomes]
rs2711858	1.00[AMR][1000 genomes]
rs2906636	1.00[AMR][1000 genomes]
rs2965084	1.00[AMR][1000 genomes]
rs2965096	1.00[AMR][1000 genomes]
rs362751	1.00[AMR][1000 genomes]
rs7808975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1031750	chr7:103031836-103067306	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103032800-103038800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:103033000-103033600	Enhancers	K562	blood
3	chr7:103033200-103034400	Enhancers	Gastric	stomach
4	chr7:103033200-103037200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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