Variant report
| Variant | rs2906636 |
|---|---|
| Chromosome Location | chr7:103064832-103064833 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103064365..103066783-chr7:103071791..103075668,4 | K562 | blood: | |
| 2 | chr7:103060391..103062412-chr7:103064074..103067234,3 | K562 | blood: | |
| 3 | chr7:103064368..103066846-chr7:103068610..103071577,2 | K562 | blood: | |
| 4 | chr7:102937571..102939280-chr7:103063812..103065320,2 | K562 | blood: | |
| 5 | chr12:120727150..120729921-chr7:103064420..103066581,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251852 | Chromatin interaction |
| ENSG00000202538 | Chromatin interaction |
| ENSG00000252047 | Chromatin interaction |
| ENSG00000170615 | Chromatin interaction |
| ENSG00000105819 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12705120 | 1.00[AMR][1000 genomes] |
| rs13240456 | 1.00[AMR][1000 genomes] |
| rs17142245 | 1.00[AMR][1000 genomes] |
| rs2528860 | 1.00[AMR][1000 genomes] |
| rs2535761 | 1.00[AMR][1000 genomes] |
| rs2535779 | 1.00[AMR][1000 genomes] |
| rs2535782 | 1.00[AMR][1000 genomes] |
| rs2711857 | 1.00[AMR][1000 genomes] |
| rs2711858 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs2965084 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2965096 | 1.00[AMR][1000 genomes] |
| rs362751 | 1.00[AMR][1000 genomes] |
| rs7808975 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031750 | chr7:103031836-103067306 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103062600-103067000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
