Variant report
| Variant | rs2711872 |
|---|---|
| Chromosome Location | chr7:103226228-103226229 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103224194..103227224-chr7:103230117..103233349,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs2535756 | 1.00[EUR][1000 genomes] |
| rs2535758 | 1.00[EUR][1000 genomes] |
| rs2535761 | 1.00[EUR][1000 genomes] |
| rs2535767 | 1.00[EUR][1000 genomes] |
| rs2535772 | 1.00[AFR][1000 genomes] |
| rs2535775 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2535776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2535779 | 1.00[EUR][1000 genomes] |
| rs2535780 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2535782 | 1.00[EUR][1000 genomes] |
| rs2711841 | 1.00[EUR][1000 genomes] |
| rs2711855 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2711856 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2711857 | 1.00[EUR][1000 genomes] |
| rs2711858 | 1.00[EUR][1000 genomes] |
| rs2711859 | 1.00[EUR][1000 genomes] |
| rs2711866 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2711868 | 1.00[EUR][1000 genomes] |
| rs2711871 | 1.00[AFR][1000 genomes] |
| rs2711880 | 1.00[EUR][1000 genomes] |
| rs28396636 | 1.00[EUR][1000 genomes] |
| rs28417002 | 1.00[EUR][1000 genomes] |
| rs2907932 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3109325 | 1.00[AFR][1000 genomes] |
| rs362657 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs362751 | 1.00[EUR][1000 genomes] |
| rs362775 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv831085 | chr7:103140672-103342388 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103206000-103243400 | Weak transcription | K562 | blood |
| 2 | chr7:103220200-103229000 | Weak transcription | HepG2 | liver |
