Variant report

Variant	rs2535756
Chromosome Location	chr7:103271225-103271226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2535758	1.00[EUR][1000 genomes]
rs2535761	1.00[EUR][1000 genomes]
rs2535767	1.00[EUR][1000 genomes]
rs2535775	1.00[EUR][1000 genomes]
rs2535776	1.00[EUR][1000 genomes]
rs2535779	1.00[EUR][1000 genomes]
rs2535780	1.00[EUR][1000 genomes]
rs2535782	1.00[EUR][1000 genomes]
rs2711841	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2711855	1.00[EUR][1000 genomes]
rs2711856	1.00[EUR][1000 genomes]
rs2711857	1.00[EUR][1000 genomes]
rs2711858	1.00[EUR][1000 genomes]
rs2711859	1.00[EUR][1000 genomes]
rs2711866	1.00[EUR][1000 genomes]
rs2711868	1.00[EUR][1000 genomes]
rs2711872	1.00[EUR][1000 genomes]
rs2711880	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28396636	1.00[EUR][1000 genomes]
rs28417002	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2907932	1.00[EUR][1000 genomes]
rs362657	1.00[EUR][1000 genomes]
rs362751	1.00[EUR][1000 genomes]
rs362775	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103268000-103272600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:103268400-103273600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:103270800-103271400	Genic enhancers	K562	blood
4	chr7:103271000-103272600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:103271200-103272400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:103271200-103272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:103271200-103272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:103271200-103272600	Weak transcription	NH-A	brain
9	chr7:103271200-103275800	Weak transcription	HepG2	liver
10	chr7:103271200-103276800	Weak transcription	NHLF	lung
11	chr7:103271200-103277000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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