Variant report

Variant	rs12722616
Chromosome Location	chr10:6104849-6104850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11256192	1.00[AMR][1000 genomes]
rs12722617	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722645	1.00[AMR][1000 genomes]
rs12722646	1.00[AMR][1000 genomes]
rs12722652	1.00[AMR][1000 genomes]
rs12722655	1.00[AMR][1000 genomes]
rs12722656	1.00[AMR][1000 genomes]
rs12722662	1.00[AMR][1000 genomes]
rs12722668	1.00[AMR][1000 genomes]
rs12722685	1.00[AMR][1000 genomes]
rs41309776	1.00[AMR][1000 genomes]
rs74116010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177601	1.00[AMR][1000 genomes]
rs8177602	1.00[AMR][1000 genomes]
rs8177605	1.00[AMR][1000 genomes]
rs8177616	1.00[AMR][1000 genomes]
rs8177659	1.00[AMR][1000 genomes]
rs8177678	1.00[AMR][1000 genomes]
rs8177686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
2	chr10:6102000-6105200	Enhancers	Primary hematopoietic stem cells	blood
3	chr10:6102200-6105000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:6102200-6107400	Weak transcription	Right Atrium	heart
5	chr10:6102200-6107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:6103400-6105000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr10:6103600-6105000	Enhancers	Primary B cells from cord blood	blood
8	chr10:6103800-6105000	Enhancers	Fetal Thymus	thymus
9	chr10:6103800-6105000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:6104000-6105200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:6104200-6105200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:6104200-6107200	Weak transcription	Left Ventricle	heart
13	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:6104400-6105000	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:6104400-6105000	Enhancers	Thymus	Thymus
16	chr10:6104400-6105200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:6104400-6107400	Weak transcription	Adipose Nuclei	Adipose
18	chr10:6104400-6107600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:6104600-6105000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:6104600-6105000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:6104600-6105000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr10:6104600-6105000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6104600-6105200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr10:6104600-6105200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:6104600-6107400	Weak transcription	Spleen	Spleen
26	chr10:6104600-6111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:6104800-6105000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:6104800-6105200	Enhancers	Primary T cells from cord blood	blood
30	chr10:6104800-6105200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:6104800-6105200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:6104800-6105200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:6104800-6105200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:6104800-6105400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:6104800-6105600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr10:6104800-6107200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:6104800-6107400	Weak transcription	Lung	lung
38	chr10:6104800-6110200	Weak transcription	GM12878-XiMat	blood

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