Variant report

Variant	rs12722668
Chromosome Location	chr10:6075496-6075497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5962148..5964571-chr10:6074505..6076333,2	K562	blood:
2	chr10:6074070..6077031-chr10:6131328..6132999,2	K562	blood:

Variant related genes	Relation type
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11256192	1.00[AMR][1000 genomes]
rs12722616	1.00[AMR][1000 genomes]
rs12722617	1.00[AMR][1000 genomes]
rs12722645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722646	1.00[AMR][1000 genomes]
rs12722652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722656	1.00[AMR][1000 genomes]
rs12722662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41309776	1.00[AMR][1000 genomes]
rs74116010	1.00[AMR][1000 genomes]
rs74116012	1.00[AMR][1000 genomes]
rs74116013	1.00[AMR][1000 genomes]
rs74116014	1.00[AMR][1000 genomes]
rs74116017	1.00[AMR][1000 genomes]
rs8177601	1.00[AMR][1000 genomes]
rs8177602	1.00[AMR][1000 genomes]
rs8177605	1.00[AMR][1000 genomes]
rs8177616	1.00[AMR][1000 genomes]
rs8177659	1.00[AMR][1000 genomes]
rs8177678	1.00[AMR][1000 genomes]
rs8177686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv894813	chr10:6071453-6076784	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6060800-6075800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:6070200-6077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:6070400-6077000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:6070400-6077600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:6071000-6075800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:6071000-6076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:6073000-6077800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:6074000-6075800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:6075200-6076000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:6075400-6075600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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