Variant report

Variant	rs74116012
Chromosome Location	chr10:6108288-6108289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11256192	1.00[AMR][1000 genomes]
rs12722616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722617	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722645	1.00[AMR][1000 genomes]
rs12722646	1.00[AMR][1000 genomes]
rs12722652	1.00[AMR][1000 genomes]
rs12722655	1.00[AMR][1000 genomes]
rs12722656	1.00[AMR][1000 genomes]
rs12722662	1.00[AMR][1000 genomes]
rs12722668	1.00[AMR][1000 genomes]
rs12722685	1.00[AMR][1000 genomes]
rs41309776	1.00[AMR][1000 genomes]
rs74116010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177601	1.00[AMR][1000 genomes]
rs8177602	1.00[AMR][1000 genomes]
rs8177605	1.00[AMR][1000 genomes]
rs8177616	1.00[AMR][1000 genomes]
rs8177659	1.00[AMR][1000 genomes]
rs8177678	1.00[AMR][1000 genomes]
rs8177686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6104600-6111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:6104800-6110200	Weak transcription	GM12878-XiMat	blood
5	chr10:6105000-6109200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:6106200-6108400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr10:6106400-6110000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:6106800-6114800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:6107000-6110800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:6107200-6108400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:6107200-6108600	Enhancers	Left Ventricle	heart
12	chr10:6107200-6108800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:6107200-6108800	Enhancers	Fetal Lung	lung
14	chr10:6107200-6109800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:6107200-6110000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:6107200-6110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6107200-6112000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:6107200-6114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:6107200-6115000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:6107400-6108600	Enhancers	Small Intestine	intestine
21	chr10:6107400-6108800	Enhancers	Right Atrium	heart
22	chr10:6107400-6108800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:6107400-6109000	Enhancers	Placenta	Placenta
24	chr10:6107400-6112000	Enhancers	Adipose Nuclei	Adipose
25	chr10:6107400-6114800	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:6107600-6108400	Enhancers	Brain Substantia Nigra	brain
27	chr10:6107600-6108600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:6107600-6108600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr10:6107600-6108800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr10:6107600-6111800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:6108000-6108400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:6108000-6108400	Bivalent Enhancer	Thymus	Thymus
33	chr10:6108000-6108600	Enhancers	Primary T cells from cord blood	blood
34	chr10:6108000-6108800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr10:6108000-6108800	Enhancers	Spleen	Spleen
36	chr10:6108000-6109000	Enhancers	Lung	lung
37	chr10:6108000-6109200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:6108000-6110000	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:6108000-6110600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
41	chr10:6108200-6108400	Enhancers	Psoas Muscle	Psoas
42	chr10:6108200-6108800	Enhancers	Primary B cells from cord blood	blood
43	chr10:6108200-6108800	Enhancers	Right Ventricle	heart
44	chr10:6108200-6109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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