Variant report

Variant	rs12722646
Chromosome Location	chr10:6086165-6086166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6079422..6081935-chr10:6085039..6087592,2	K562	blood:
2	chr10:6076656..6079069-chr10:6086121..6089076,2	MCF-7	breast:
3	chr10:6079406..6080922-chr10:6086092..6088602,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL15RA-4	chr10:6085748-6086292	NONHSAT011203

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11256192	1.00[AMR][1000 genomes]
rs12722616	1.00[AMR][1000 genomes]
rs12722617	1.00[AMR][1000 genomes]
rs12722645	1.00[AMR][1000 genomes]
rs12722652	1.00[AMR][1000 genomes]
rs12722655	1.00[AMR][1000 genomes]
rs12722656	1.00[AMR][1000 genomes]
rs12722662	1.00[AMR][1000 genomes]
rs12722668	1.00[AMR][1000 genomes]
rs12722685	1.00[AMR][1000 genomes]
rs41309776	1.00[AMR][1000 genomes]
rs74116010	1.00[AMR][1000 genomes]
rs74116012	1.00[AMR][1000 genomes]
rs74116013	1.00[AMR][1000 genomes]
rs74116014	1.00[AMR][1000 genomes]
rs74116017	1.00[AMR][1000 genomes]
rs8177601	1.00[AMR][1000 genomes]
rs8177602	1.00[AMR][1000 genomes]
rs8177605	1.00[AMR][1000 genomes]
rs8177616	1.00[AMR][1000 genomes]
rs8177659	1.00[AMR][1000 genomes]
rs8177678	1.00[AMR][1000 genomes]
rs8177686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6080200-6086400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6080600-6086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6084800-6086200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:6085200-6086400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6085400-6086800	Enhancers	Primary T cells from cord blood	blood
6	chr10:6085400-6086800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:6085400-6086800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:6085400-6087200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:6085600-6087200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:6085600-6092000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:6085800-6086800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:6085800-6088200	Enhancers	Primary B cells from cord blood	blood
13	chr10:6085800-6088200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
14	chr10:6085800-6092400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:6086000-6086400	Enhancers	GM12878-XiMat	blood
16	chr10:6086000-6086600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:6086000-6086600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:6086000-6086800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:6086000-6086800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:6086000-6087000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:6086000-6087600	Enhancers	Fetal Thymus	thymus
22	chr10:6086000-6087800	Enhancers	Thymus	Thymus
23	chr10:6086000-6088800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr10:6086000-6093000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--

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