Variant report

Variant	rs12742152
Chromosome Location	chr1:70293356-70293357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11209552	0.99[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11583726	0.82[AMR][1000 genomes]
rs12024338	0.82[AMR][1000 genomes]
rs12408317	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12566838	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12725436	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12733263	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12735430	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12739761	0.87[ASN][1000 genomes]
rs12739765	0.87[ASN][1000 genomes]
rs12739884	0.87[ASN][1000 genomes]
rs12742811	0.81[ASN][1000 genomes]
rs12745809	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12752925	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12753235	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12754604	0.81[ASN][1000 genomes]
rs12755858	0.83[ASN][1000 genomes]
rs12758679	0.88[ASN][1000 genomes]
rs12758978	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17444982	0.87[ASN][1000 genomes]
rs1913272	0.83[ASN][1000 genomes]
rs1913273	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1913275	0.81[ASN][1000 genomes]
rs1938574	0.81[ASN][1000 genomes]
rs1938575	0.81[ASN][1000 genomes]
rs1938579	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938584	0.82[AMR][1000 genomes]
rs6665026	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6686752	0.84[AMR][1000 genomes]
rs6691577	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6695135	0.81[AMR][1000 genomes]
rs6703428	0.82[AMR][1000 genomes]
rs7529450	0.81[ASN][1000 genomes]
rs7531255	0.85[AMR][1000 genomes]
rs7536408	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7544286	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70288000-70293600	Weak transcription	Psoas Muscle	Psoas
2	chr1:70291000-70296800	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:70291000-70301400	Weak transcription	Fetal Brain Female	brain
4	chr1:70291000-70302200	Weak transcription	Brain Germinal Matrix	brain
5	chr1:70291000-70302800	Weak transcription	Fetal Brain Male	brain

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