Variant report

Variant	rs1938579
Chromosome Location	chr1:70303097-70303098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70286905..70288667-chr1:70301183..70303525,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11209552	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578884	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11579093	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11583726	0.83[AMR][1000 genomes]
rs11809203	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs12024338	0.83[AMR][1000 genomes]
rs12075318	0.82[YRI][hapmap]
rs12408317	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12564295	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12566838	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12568093	0.80[ASN][1000 genomes]
rs12725436	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12727806	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12730345	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12733263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12735430	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12739761	0.87[ASN][1000 genomes]
rs12739765	0.87[ASN][1000 genomes]
rs12739884	0.88[ASN][1000 genomes]
rs12742152	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12742811	0.81[ASN][1000 genomes]
rs12745809	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12747331	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12751816	0.87[CHB][hapmap]
rs12751995	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12752925	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12753235	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12754604	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12755858	0.84[ASN][1000 genomes]
rs12756253	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12758679	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12758978	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759650	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1513296	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs17131072	0.80[YRI][hapmap]
rs17444982	0.88[ASN][1000 genomes]
rs1913272	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1913273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913274	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1913275	0.81[ASN][1000 genomes]
rs1938574	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1938575	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1938576	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1938584	0.81[AMR][1000 genomes]
rs1938585	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2025895	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2025896	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2211659	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2226284	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2859933	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs35297595	0.80[ASN][1000 genomes]
rs4564093	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6663915	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6665026	0.81[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6686752	0.85[AMR][1000 genomes]
rs6687846	0.80[ASN][1000 genomes]
rs6691577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6695135	0.82[AMR][1000 genomes]
rs6703428	0.81[AMR][1000 genomes]
rs7512258	0.80[ASN][1000 genomes]
rs7529450	0.81[ASN][1000 genomes]
rs7531255	0.84[AMR][1000 genomes]
rs7536408	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544286	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70298000-70312200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:70301200-70303200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:70301600-70303200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:70301600-70303400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:70301800-70303200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:70301800-70303200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:70302400-70303200	Enhancers	Fetal Brain Female	brain
8	chr1:70302600-70303200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr1:70302800-70303200	Enhancers	Fetal Brain Male	brain

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