Variant report

Variant	rs35297595
Chromosome Location	chr1:70383930-70383931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:70383888-70383938	H1-hESC	embryonic stem cell:	embryo
2	chr1:70383888-70383938	NHBE	bronchial:	n/a
3	chr1:70383888-70383938	LNCaP	prostate:	n/a
4	chr1:70383888-70383938	T-47D	breast:	n/a
5	chr1:70383888-70383938	HAEpiC	amniotic membrane:	n/a
6	chr1:70383888-70383938	SKMC	muscle:	n/a
7	chr1:70383888-70383938	Jurkat	blood:	n/a
8	chr1:70383888-70383938	K562	blood:	n/a
9	chr1:70383888-70383938	HRCEpiC	kidney:	n/a
10	chr1:70383888-70383938	HCT-116	colon:	n/a
11	chr1:70383888-70383938	HRE	kidney:	n/a
12	chr1:70383888-70383938	SAEC	small airway:	n/a
13	chr1:70383888-70383938	SK-N-SH	brain:	n/a
14	chr1:70383888-70383938	PANC-1	pancreas:	n/a
15	chr1:70383888-70383938	ECC-1	luminal epithelium:	n/a
16	chr1:70383888-70383938	MCF10A-Er-Src	breast:	n/a
17	chr1:70383888-70383938	AoSMC	blood vessel:	n/a
18	chr1:70383888-70383938	HUVEC	blood vessel:	n/a
19	chr1:70383888-70383938	A549	lung:	n/a
20	chr1:70383888-70383938	HRPEpiC	eye:	n/a
21	chr1:70383888-70383938	AG10803	skin:	n/a
22	chr1:70383888-70383938	IMR90	lung:	fetal
23	chr1:70383888-70383938	HIPEpiC	eye:	n/a
24	chr1:70383888-70383938	NB4	blood:	n/a
25	chr1:70383888-70383938	SK-N-SH_RA	brain:	n/a
26	chr1:70383888-70383938	HepG2	liver:	n/a
27	chr1:70383888-70383938	GM19239	blood:	n/a
28	chr1:70383888-70383938	AG09319	gingival:	n/a
29	chr1:70383888-70383938	CMK	blood:	n/a
30	chr1:70383888-70383938	AG04449	skin:	fetal
31	chr1:70383888-70383938	HCF	heart:	n/a
32	chr1:70383888-70383938	HPAEpiC	pulmonary alveolar:	n/a
33	chr1:70383888-70383938	GM12891	blood:	n/a
34	chr1:70383888-70383938	HCM	heart:	n/a
35	chr1:70383888-70383938	BJ	skin:	n/a
36	chr1:70383888-70383938	RPTEC	kidney:	n/a
37	chr1:70383888-70383938	HCPEpiC	choroid plexus:	n/a
38	chr1:70383888-70383938	PrEC	prostate:	n/a
39	chr1:70383888-70383938	GM12878	blood:	n/a
40	chr1:70383888-70383938	Hela-S3	cervix:	n/a
41	chr1:70383888-70383938	ProgFib	skin:	n/a
42	chr1:70383888-70383938	HEEpiC	esophagus:	n/a
43	chr1:70383888-70383938	MCF-7	breast:	n/a
44	chr1:70383888-70383938	BE2_C	brain:	n/a
45	chr1:70383888-70383938	NHDF-neo	bronchial:	n/a
46	chr1:70383888-70383938	GM06990	blood:	n/a
47	chr1:70383888-70383938	HMEC	breast:	n/a
48	chr1:70383888-70383938	PFSK-1	brain:	n/a
49	chr1:70383888-70383938	AG09309	skin:	n/a
50	chr1:70383888-70383938	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
PIN1P1	CpG island

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1120344	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11209552	0.80[ASN][1000 genomes]
rs12408317	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12566838	0.82[AMR][1000 genomes]
rs12568093	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12725425	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12733263	0.82[ASN][1000 genomes]
rs12735430	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12739761	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12739765	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12739884	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12742811	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12745809	0.84[AMR][1000 genomes]
rs12751773	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12752925	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12753235	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12754604	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12755858	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12756253	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12758679	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12758978	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17444982	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1913272	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1913273	0.82[ASN][1000 genomes]
rs1913275	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938574	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938575	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938579	0.80[ASN][1000 genomes]
rs2025895	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025896	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421316	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59350933	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6665026	0.82[AMR][1000 genomes]
rs6687846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691577	0.81[ASN][1000 genomes]
rs7512258	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523425	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7529450	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7536181	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7536408	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70381600-70384000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:70382600-70385000	Weak transcription	Brain Germinal Matrix	brain
4	chr1:70383600-70385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links