Variant report

Variant	rs7536181
Chromosome Location	chr1:70379465-70379466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1120344	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12408317	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12566838	0.82[AMR][1000 genomes]
rs12568093	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12725425	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12733263	0.81[ASN][1000 genomes]
rs12735430	0.85[AMR][1000 genomes]
rs12739761	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12739765	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12739884	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12742811	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12745809	0.84[AMR][1000 genomes]
rs12751773	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12752925	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12753235	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12754604	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12755858	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12756253	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12758679	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12758978	0.86[AMR][1000 genomes]
rs17444982	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1913272	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913273	0.81[ASN][1000 genomes]
rs1913275	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938574	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938575	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025895	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025896	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421316	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35297595	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59350933	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6665026	0.82[AMR][1000 genomes]
rs6687846	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691577	0.81[ASN][1000 genomes]
rs7512258	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7523425	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7529450	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7536408	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv947491	chr1:70377933-70382966	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70377000-70381200	Enhancers	HUVEC	blood vessel
2	chr1:70377200-70380000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:70377400-70380000	Weak transcription	NHLF	lung
4	chr1:70377400-70380600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:70377600-70380000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:70377800-70380400	Weak transcription	NHDF-Ad	bronchial
7	chr1:70377800-70380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:70378200-70380000	Weak transcription	Adipose Nuclei	Adipose
9	chr1:70378400-70379600	Weak transcription	HSMM	muscle
10	chr1:70378400-70380600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:70378600-70379800	Weak transcription	Hela-S3	cervix
12	chr1:70379200-70379600	Enhancers	Fetal Muscle Trunk	muscle
13	chr1:70379200-70379800	Enhancers	Fetal Muscle Leg	muscle
14	chr1:70379200-70380000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:70379200-70380000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:70379200-70380800	Enhancers	Ovary	ovary
17	chr1:70379200-70381000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:70379200-70381000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:70379200-70381600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:70379200-70381600	Enhancers	Fetal Lung	lung
21	chr1:70379400-70379600	Enhancers	Small Intestine	intestine
22	chr1:70379400-70380200	Enhancers	Stomach Smooth Muscle	stomach
23	chr1:70379400-70380800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:70379400-70380800	Enhancers	Colon Smooth Muscle	Colon
25	chr1:70379400-70381000	Enhancers	Fetal Stomach	stomach
26	chr1:70379400-70381600	Enhancers	HSMMtube	muscle
27	chr1:70379400-70381600	Enhancers	Osteobl	bone

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