Variant report
Variant | rs12725425 |
---|---|
Chromosome Location | chr1:70415161-70415162 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:70414870..70417242-chr1:70419207..70421532,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1120344 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12025026 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs12568093 | 0.90[EUR][1000 genomes] |
rs12739761 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12739765 | 0.88[EUR][1000 genomes] |
rs12739884 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12742811 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12751773 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12754604 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12755858 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12756122 | 0.84[AMR][1000 genomes] |
rs12756253 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12758679 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs17444982 | 0.88[EUR][1000 genomes] |
rs1913272 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1913275 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1938574 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1938575 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2025895 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2025896 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2421316 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs35297595 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs59350933 | 0.90[EUR][1000 genomes] |
rs6424611 | 0.84[AMR][1000 genomes] |
rs6687846 | 0.90[EUR][1000 genomes] |
rs7512258 | 0.90[EUR][1000 genomes] |
rs7523425 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7529450 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7536181 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs7536845 | 0.84[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv428466 | chr1:70306638-70455357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv531879 | chr1:70386455-70644617 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
3 | nsv947492 | chr1:70414280-70420191 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:70402000-70419800 | Weak transcription | Fetal Brain Male | brain |