Variant report

Variant	rs2025895
Chromosome Location	chr1:70404163-70404164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1120344	0.96[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11209552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11578884	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11579093	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11809203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12025026	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12408317	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12564295	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12568093	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12725425	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12725436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12727806	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12730345	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12733263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12735430	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12739761	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12739765	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12739884	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12742811	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12747331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12751773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12751816	0.85[CHB][hapmap]
rs12751995	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12752925	0.82[ASN][1000 genomes]
rs12753235	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12754604	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12755858	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12756122	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12756253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758679	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12758978	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12759650	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1513296	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17444982	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1913272	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1913274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913275	1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938576	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1938579	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1938585	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2025896	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132485	0.87[CEU][hapmap]
rs2211659	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2226284	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2421316	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859933	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35297595	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4564093	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs59350933	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6424611	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6663915	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6665026	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6687846	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6691577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7512258	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7523425	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7529450	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7536181	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7536408	0.81[ASN][1000 genomes]
rs7536845	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70402000-70419800	Weak transcription	Fetal Brain Male	brain

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