Variant report

Variant	rs2226284
Chromosome Location	chr1:70335682-70335683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10889860	0.83[AMR][1000 genomes]
rs1120344	0.81[CEU][hapmap]
rs11209552	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs11209557	0.88[MEX][hapmap]
rs11209564	0.83[AMR][1000 genomes]
rs11578884	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11579093	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs11809203	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs12025637	0.88[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes]
rs12031885	0.84[AMR][1000 genomes]
rs12039507	0.85[AMR][1000 genomes]
rs12039534	0.85[AMR][1000 genomes]
rs12408317	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12564295	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12566838	0.83[ASN][1000 genomes]
rs12568093	0.87[ASN][1000 genomes]
rs12725436	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12727806	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12730345	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12733263	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12735430	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12739761	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12739765	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12739884	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12742152	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12742811	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12745809	0.90[ASN][1000 genomes]
rs12747331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12751773	0.85[ASN][1000 genomes]
rs12751816	0.86[CHB][hapmap]
rs12751995	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12752925	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12753235	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12754604	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12755858	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12756253	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12758679	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12758978	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12759650	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1513296	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17444982	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913270	0.88[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs1913272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1913273	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913274	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1913275	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1938574	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1938575	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1938576	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs1938579	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938584	0.82[AMR][1000 genomes]
rs1938585	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2025895	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2025896	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2211659	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs2421306	0.85[AMR][1000 genomes]
rs2421307	0.85[AMR][1000 genomes]
rs2421308	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2421316	0.86[ASN][1000 genomes]
rs2859933	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35297595	0.87[ASN][1000 genomes]
rs4564093	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs4623650	1.00[ASW][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap]
rs59350933	0.86[ASN][1000 genomes]
rs6663915	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs6665026	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6686752	0.88[MEX][hapmap]
rs6687846	0.87[ASN][1000 genomes]
rs6691577	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6695135	0.81[AMR][1000 genomes]
rs6695450	0.88[MEX][hapmap];0.82[TSI][hapmap]
rs6703428	0.82[AMR][1000 genomes]
rs7512258	0.87[ASN][1000 genomes]
rs7523425	0.85[ASN][1000 genomes]
rs7529450	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7530457	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs7536181	0.87[ASN][1000 genomes]
rs7536408	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787350	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Hypertension risk in short sleep duration	22322875	GWAS catalog

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links