Variant report

Variant	rs12566838
Chromosome Location	chr1:70287402-70287403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70286905..70288667-chr1:70301183..70303525,2	K562	blood:
2	chr1:70283782..70286242-chr1:70286706..70289551,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11209552	0.89[ASN][1000 genomes]
rs12408317	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12568093	0.81[AMR][1000 genomes]
rs12725436	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12733263	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12735430	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12739761	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12739765	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12739884	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12742152	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12742811	0.85[AMR][1000 genomes]
rs12745809	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12752925	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12753235	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12754604	0.84[AMR][1000 genomes]
rs12755858	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12758679	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12758978	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17444982	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1913272	0.84[AMR][1000 genomes]
rs1913273	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1913275	0.85[AMR][1000 genomes]
rs1938574	0.83[AMR][1000 genomes]
rs1938575	0.85[AMR][1000 genomes]
rs1938579	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35297595	0.82[AMR][1000 genomes]
rs6665026	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691577	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7529450	0.85[AMR][1000 genomes]
rs7536181	0.82[AMR][1000 genomes]
rs7536408	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv521307	chr1:70282875-70288647	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70287200-70290200	Weak transcription	Brain Germinal Matrix	brain

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