Variant report

Variant	rs12568093
Chromosome Location	chr1:70383608-70383609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1120344	0.89[EUR][1000 genomes]
rs11209552	0.80[ASN][1000 genomes]
rs12408317	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12566838	0.81[AMR][1000 genomes]
rs12725425	0.90[EUR][1000 genomes]
rs12733263	0.82[ASN][1000 genomes]
rs12735430	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12739761	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12739765	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12739884	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12742811	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12745809	0.83[AMR][1000 genomes]
rs12751773	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12752925	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12753235	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12754604	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12755858	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12756253	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12758679	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12758978	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17444982	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1913272	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1913273	0.82[ASN][1000 genomes]
rs1913275	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938574	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938575	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938579	0.80[ASN][1000 genomes]
rs2025895	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025896	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421316	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35297595	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59350933	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6665026	0.81[AMR][1000 genomes]
rs6687846	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691577	0.81[ASN][1000 genomes]
rs7512258	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523425	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7529450	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7536181	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7536408	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70381600-70384000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:70382600-70385000	Weak transcription	Brain Germinal Matrix	brain
4	chr1:70383600-70385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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