Variant report

Variant	rs2025896
Chromosome Location	chr1:70405236-70405237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70404215..70406769-chr1:70408671..70411527,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10493457	0.83[YRI][hapmap]
rs1120344	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11209552	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11578884	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11579093	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs11809203	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs12025026	0.91[ASW][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12408317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12564295	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12568093	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12725425	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12725436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12727806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12730345	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12733263	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12735430	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12739761	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12739765	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12739884	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12742811	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12747331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12751773	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12751816	0.86[CHB][hapmap]
rs12751995	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12752925	0.81[ASN][1000 genomes]
rs12754604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12755858	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12756122	0.91[ASW][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12756253	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12758679	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12758978	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap]
rs12759650	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1513296	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17444982	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1913272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1913273	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913275	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938574	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938575	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938576	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap]
rs1938579	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1938585	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2025895	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132485	0.81[CEU][hapmap]
rs2211659	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2226284	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs2421316	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2859933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35297595	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4564093	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs59350933	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6424611	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6663915	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs6665026	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6687846	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6691577	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7512258	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7523425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529450	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7536181	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7536845	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70402000-70419800	Weak transcription	Fetal Brain Male	brain
2	chr1:70405000-70405400	Enhancers	Brain Inferior Temporal Lobe	brain

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