Variant report

Variant	rs11209552
Chromosome Location	chr1:70297993-70297994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11578884	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11579093	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11809203	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12408317	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12564295	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12566838	0.89[ASN][1000 genomes]
rs12568093	0.80[ASN][1000 genomes]
rs12725436	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12727806	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12730345	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12733263	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12735430	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs12739761	0.87[ASN][1000 genomes]
rs12739765	0.87[ASN][1000 genomes]
rs12739884	0.88[ASN][1000 genomes]
rs12742152	0.99[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12742811	0.81[ASN][1000 genomes]
rs12745809	0.98[ASN][1000 genomes]
rs12747331	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12751816	0.86[CHB][hapmap]
rs12751995	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12752925	0.94[ASN][1000 genomes]
rs12753235	0.92[ASN][1000 genomes]
rs12754604	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12755858	0.84[ASN][1000 genomes]
rs12756253	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12758679	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12758978	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12759650	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1513296	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17131037	0.85[YRI][hapmap]
rs17131039	0.84[YRI][hapmap]
rs17131072	0.89[YRI][hapmap]
rs17444982	0.88[ASN][1000 genomes]
rs1913272	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1913273	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913274	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1913275	0.81[ASN][1000 genomes]
rs1938574	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1938575	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1938576	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1938579	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938585	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2025895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2025896	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2211659	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2226284	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2859933	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs35297595	0.80[ASN][1000 genomes]
rs4564093	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs6663915	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6665026	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs6687846	0.80[ASN][1000 genomes]
rs6691577	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7512258	0.80[ASN][1000 genomes]
rs7529450	0.81[ASN][1000 genomes]
rs7536408	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70291000-70301400	Weak transcription	Fetal Brain Female	brain
2	chr1:70291000-70302200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:70291000-70302800	Weak transcription	Fetal Brain Male	brain
4	chr1:70297800-70298000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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