Variant report

Variant	rs17131072
Chromosome Location	chr1:70346674-70346675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10399623	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10889862	0.82[YRI][hapmap]
rs10889863	0.82[EUR][1000 genomes]
rs11209552	0.89[YRI][hapmap]
rs11209577	0.86[YRI][hapmap]
rs11809203	0.82[YRI][hapmap]
rs12027907	0.84[YRI][hapmap]
rs12032656	0.86[YRI][hapmap]
rs12059668	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12063369	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12075318	0.89[YRI][hapmap]
rs12086732	0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12090593	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12095499	1.00[CEU][hapmap]
rs12725436	0.82[YRI][hapmap]
rs17131037	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131038	1.00[CEU][hapmap]
rs17131039	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17131053	0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1913274	0.81[YRI][hapmap]
rs1938579	0.80[YRI][hapmap]
rs2211659	0.86[YRI][hapmap]
rs2211660	0.84[YRI][hapmap]
rs61782560	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61782572	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61782573	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61784020	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61784021	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61784023	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6681560	0.84[YRI][hapmap]
rs6694951	0.86[YRI][hapmap]
rs6695130	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704345	0.86[YRI][hapmap]
rs72676804	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70345400-70347400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:70345600-70347000	Enhancers	Monocytes-CD14+_RO01746	blood

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