Variant report

Variant	rs17131038
Chromosome Location	chr1:70296904-70296905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10399623	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10889863	0.90[YRI][hapmap]
rs11802766	0.90[YRI][hapmap]
rs12075955	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12095499	1.00[CEU][hapmap]
rs17131037	1.00[CEU][hapmap]
rs17131039	1.00[CEU][hapmap]
rs17131072	1.00[CEU][hapmap]
rs2211660	1.00[CEU][hapmap]
rs41440946	0.90[YRI][hapmap]
rs61784020	0.88[EUR][1000 genomes]
rs61784021	0.88[EUR][1000 genomes]
rs7554827	0.90[YRI][hapmap]
rs7556220	1.00[CEU][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70291000-70301400	Weak transcription	Fetal Brain Female	brain
2	chr1:70291000-70302200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:70291000-70302800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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