Variant report

Variant	rs7556220
Chromosome Location	chr1:70280269-70280270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10399623	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs10889863	1.00[GIH][hapmap];0.95[YRI][hapmap]
rs11802766	0.95[YRI][hapmap]
rs12062605	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs12074727	0.84[ASW][hapmap];0.85[GIH][hapmap]
rs12075955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12088269	0.85[GIH][hapmap]
rs17131038	1.00[CEU][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17131039	1.00[GIH][hapmap]
rs41440946	1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs61784020	0.84[EUR][1000 genomes]
rs61784021	0.84[EUR][1000 genomes]
rs7554827	1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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