Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10889863	0.90[YRI][hapmap]
rs11802766	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs12063369	0.82[EUR][1000 genomes]
rs12066962	0.85[AMR][1000 genomes]
rs12086732	0.82[EUR][1000 genomes]
rs12090593	0.82[EUR][1000 genomes]
rs12095499	1.00[CEU][hapmap]
rs17131037	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17131038	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17131039	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17131047	0.82[EUR][1000 genomes]
rs17131053	0.82[EUR][1000 genomes]
rs17131072	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs41440946	0.90[YRI][hapmap]
rs61782560	0.82[EUR][1000 genomes]
rs61782572	0.82[EUR][1000 genomes]
rs61782573	0.82[EUR][1000 genomes]
rs61784023	0.82[EUR][1000 genomes]
rs6695130	0.86[EUR][1000 genomes]
rs72676804	0.95[EUR][1000 genomes]
rs72676811	0.89[EUR][1000 genomes]
rs7554827	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs7556220	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70298000-70312200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:70303200-70311600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:70303200-70313200	Weak transcription	Fetal Brain Female	brain

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