Variant report

Variant	rs12086732
Chromosome Location	chr1:70313699-70313700
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10399623	0.82[EUR][1000 genomes]
rs10889862	0.81[ASW][hapmap]
rs10889863	1.00[TSI][hapmap]
rs11209577	0.81[ASW][hapmap]
rs11209583	0.87[ASW][hapmap]
rs11809203	0.85[YRI][hapmap]
rs12032656	0.81[ASW][hapmap]
rs12048343	0.94[ASW][hapmap]
rs12059668	0.83[EUR][1000 genomes]
rs12063369	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074727	0.83[TSI][hapmap]
rs12075318	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap]
rs12088269	0.83[TSI][hapmap]
rs12090593	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1327884	0.81[ASW][hapmap]
rs17131037	0.81[YRI][hapmap];0.96[EUR][1000 genomes]
rs17131039	0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs17131047	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131053	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131072	0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1913273	0.86[YRI][hapmap]
rs61782560	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61782572	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61782573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61784020	0.80[EUR][1000 genomes]
rs61784021	0.80[EUR][1000 genomes]
rs61784023	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694951	0.81[ASW][hapmap]
rs6695130	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6704345	0.81[ASW][hapmap]
rs984950	0.87[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70311400-70313800	Enhancers	Brain Angular Gyrus	brain
2	chr1:70312200-70315800	Weak transcription	HUVEC	blood vessel
3	chr1:70312400-70313800	Enhancers	Brain Anterior Caudate	brain
4	chr1:70313400-70315000	Enhancers	Fetal Brain Male	brain

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