Variant report

Variant	rs17131039
Chromosome Location	chr1:70299296-70299297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10399623	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10889862	0.93[ASW][hapmap];0.82[YRI][hapmap]
rs10889863	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs11209552	0.84[YRI][hapmap]
rs11209577	0.93[ASW][hapmap]
rs11209583	0.87[ASW][hapmap]
rs11809203	0.90[LWK][hapmap];0.82[YRI][hapmap]
rs12032656	0.93[ASW][hapmap]
rs12048343	0.81[ASW][hapmap]
rs12059668	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12062605	0.85[GIH][hapmap]
rs12063369	0.87[ASW][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12074727	0.85[GIH][hapmap];0.83[TSI][hapmap]
rs12075318	0.93[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap]
rs12086732	0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs12088269	0.85[GIH][hapmap];0.83[TSI][hapmap]
rs12090593	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12095499	1.00[CEU][hapmap]
rs1327884	0.81[ASW][hapmap]
rs17131037	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131038	1.00[CEU][hapmap]
rs17131047	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17131053	0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs17131072	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41440946	1.00[GIH][hapmap]
rs61782560	0.96[EUR][1000 genomes]
rs61782572	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61782573	0.96[EUR][1000 genomes]
rs61784020	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61784021	0.99[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61784023	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6691577	0.81[LWK][hapmap]
rs6694951	0.93[ASW][hapmap]
rs6695130	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704345	0.93[ASW][hapmap]
rs72676804	0.81[EUR][1000 genomes]
rs7554827	1.00[GIH][hapmap]
rs7556220	1.00[GIH][hapmap]
rs984950	0.87[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70291000-70301400	Weak transcription	Fetal Brain Female	brain
2	chr1:70291000-70302200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:70291000-70302800	Weak transcription	Fetal Brain Male	brain
4	chr1:70298000-70312200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:70299200-70300200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links