Variant report

Variant	rs10889862
Chromosome Location	chr1:70365414-70365415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11209577	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs11209583	0.81[ASW][hapmap];0.80[CEU][hapmap];0.90[TSI][hapmap]
rs12024702	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12026558	0.80[CEU][hapmap]
rs12027907	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12029982	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12032656	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs12035080	0.83[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs12037173	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs12047337	0.97[ASN][1000 genomes]
rs12048343	0.80[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs12049401	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12059668	0.83[AFR][1000 genomes]
rs12075318	0.87[ASW][hapmap]
rs12086732	0.81[ASW][hapmap]
rs1327884	0.80[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs1410253	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17097465	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17097466	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17131037	0.81[YRI][hapmap]
rs17131039	0.93[ASW][hapmap];0.82[YRI][hapmap]
rs17131060	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17131061	0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs17131066	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17131072	0.82[YRI][hapmap]
rs17131088	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17131096	0.80[CEU][hapmap]
rs1938581	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3738120	0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs3738121	0.97[ASN][1000 genomes]
rs4494098	0.97[ASN][1000 genomes]
rs4623650	0.83[YRI][hapmap]
rs6658642	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6681560	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6694951	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs6704345	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs984950	0.81[ASW][hapmap];0.80[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv525370	chr1:70361833-70367087	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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