Variant report

Variant	rs17097465
Chromosome Location	chr1:70399182-70399183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1015819	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10889862	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs10889864	0.85[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11209577	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs11209581	0.88[EUR][1000 genomes]
rs11209582	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12022309	0.88[EUR][1000 genomes]
rs12022612	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12023122	0.85[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12023579	0.88[EUR][1000 genomes]
rs12023932	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12024182	0.88[EUR][1000 genomes]
rs12024249	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12024298	0.88[EUR][1000 genomes]
rs12024702	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12024870	0.88[EUR][1000 genomes]
rs12024978	0.90[EUR][1000 genomes]
rs12026220	0.90[EUR][1000 genomes]
rs12026306	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs12027422	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12027457	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12027907	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12028648	0.88[EUR][1000 genomes]
rs12029982	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12030588	0.88[EUR][1000 genomes]
rs12030680	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12030875	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12031434	0.90[EUR][1000 genomes]
rs12031770	0.88[EUR][1000 genomes]
rs12031827	0.88[EUR][1000 genomes]
rs12032155	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12032200	0.88[EUR][1000 genomes]
rs12032252	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12032656	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs12032818	0.90[EUR][1000 genomes]
rs12032893	0.90[EUR][1000 genomes]
rs12032951	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs12033282	0.88[EUR][1000 genomes]
rs12033308	0.88[EUR][1000 genomes]
rs12033380	0.86[EUR][1000 genomes]
rs12033628	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs12034575	0.87[EUR][1000 genomes]
rs12035080	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs12035355	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12035691	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12035813	0.86[EUR][1000 genomes]
rs12035905	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12036676	0.90[EUR][1000 genomes]
rs12036805	0.86[EUR][1000 genomes]
rs12036806	0.90[EUR][1000 genomes]
rs12037173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12038059	0.82[CEU][hapmap]
rs12038529	0.90[EUR][1000 genomes]
rs12040135	0.86[EUR][1000 genomes]
rs12040177	1.00[TSI][hapmap]
rs12040267	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12040896	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12043804	0.88[EUR][1000 genomes]
rs12043886	0.88[EUR][1000 genomes]
rs12043911	0.88[EUR][1000 genomes]
rs12045140	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12045530	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12046022	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12046847	0.88[EUR][1000 genomes]
rs12047337	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047486	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs12047501	0.88[EUR][1000 genomes]
rs12047627	1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs12048494	0.88[EUR][1000 genomes]
rs12048932	0.88[EUR][1000 genomes]
rs12049401	0.92[ASN][1000 genomes]
rs1327880	0.90[EUR][1000 genomes]
rs1327881	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs1410251	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1410252	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1410253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1576119	0.90[EUR][1000 genomes]
rs17097466	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131060	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs17131061	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17131066	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17131088	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17446829	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs17505551	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs17505598	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1854221	0.92[EUR][1000 genomes]
rs1938581	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3738120	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738121	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494098	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56920619	0.90[EUR][1000 genomes]
rs57363111	0.88[EUR][1000 genomes]
rs58259872	0.88[EUR][1000 genomes]
rs6658642	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6681560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6694951	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6704345	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs7556475	0.88[EUR][1000 genomes]
rs8179494	1.00[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70397200-70400600	Weak transcription	Fetal Brain Female	brain

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