Variant report

Variant	rs3738121
Chromosome Location	chr1:70385625-70385626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12024702	0.82[ASN][1000 genomes]
rs12035080	0.91[ASN][1000 genomes]
rs12040267	0.87[AFR][1000 genomes]
rs12047337	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12049401	0.92[ASN][1000 genomes]
rs1410253	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17097465	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097466	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131060	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17131088	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938581	0.81[ASN][1000 genomes]
rs3738120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658642	0.84[ASN][1000 genomes]
rs6681560	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70385000-70385800	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr1:70385000-70388000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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