Variant report

Variant	rs1938581
Chromosome Location	chr1:70294568-70294569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10889862	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11209577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12024702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027907	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12029982	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12032656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12035080	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12037173	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047337	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12049401	0.83[ASN][1000 genomes]
rs1410253	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17097465	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17097466	0.87[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs17131060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17131061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17131066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17131088	0.87[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs3738120	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs3738121	0.81[ASN][1000 genomes]
rs4494098	0.81[ASN][1000 genomes]
rs6658642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6681560	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6694951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6704345	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461784	chr1:70231535-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv546452	chr1:70231535-70306245	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1842679	chr1:70279860-70306245	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70291000-70296800	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:70291000-70301400	Weak transcription	Fetal Brain Female	brain
3	chr1:70291000-70302200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:70291000-70302800	Weak transcription	Fetal Brain Male	brain

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