Variant report

Variant	rs6681560
Chromosome Location	chr1:70364313-70364314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10889862	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11209577	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11209583	0.80[CEU][hapmap]
rs12024702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12026558	0.82[CEU][hapmap]
rs12027907	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12029982	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12032656	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12035080	0.86[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs12037173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047337	0.97[ASN][1000 genomes]
rs12048343	0.80[CEU][hapmap]
rs12049401	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12059668	0.80[AFR][1000 genomes]
rs1327884	0.80[CEU][hapmap]
rs1410253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17097465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17097466	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17131060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17131061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17131066	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17131072	0.84[YRI][hapmap]
rs17131088	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17131096	0.82[CEU][hapmap]
rs1938581	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3738120	0.88[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs3738121	0.97[ASN][1000 genomes]
rs4494098	0.97[ASN][1000 genomes]
rs4623650	0.86[YRI][hapmap]
rs6658642	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6694951	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6704345	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs984950	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv525370	chr1:70361833-70367087	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70363800-70364400	Enhancers	Brain Angular Gyrus	brain
2	chr1:70364200-70364800	Enhancers	Brain Cingulate Gyrus	brain

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