Variant report

Variant	rs12049401
Chromosome Location	chr1:70347379-70347380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12024702	0.84[ASN][1000 genomes]
rs12035080	0.96[ASN][1000 genomes]
rs12047337	0.92[ASN][1000 genomes]
rs1410253	0.91[ASN][1000 genomes]
rs17097465	0.92[ASN][1000 genomes]
rs17097466	0.92[ASN][1000 genomes]
rs17131060	1.00[ASN][1000 genomes]
rs17131088	0.91[ASN][1000 genomes]
rs1938581	0.83[ASN][1000 genomes]
rs3738120	0.92[ASN][1000 genomes]
rs3738121	0.92[ASN][1000 genomes]
rs4494098	0.92[ASN][1000 genomes]
rs6658642	0.87[ASN][1000 genomes]
rs6681560	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70345400-70347400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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