Variant report

Variant	rs6658642
Chromosome Location	chr1:70311793-70311794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10889862	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11209577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12024702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12027907	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12029982	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12032656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12035080	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12037173	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047337	0.84[ASN][1000 genomes]
rs12049401	0.87[ASN][1000 genomes]
rs1410253	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17097465	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17097466	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17131060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17131061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17131066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs17131088	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1938581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3738120	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs3738121	0.84[ASN][1000 genomes]
rs4494098	0.84[ASN][1000 genomes]
rs6681560	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6689992	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6694951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6704345	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70298000-70312200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:70303200-70313200	Weak transcription	Fetal Brain Female	brain
3	chr1:70311200-70311800	Enhancers	Brain Anterior Caudate	brain
4	chr1:70311400-70312400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:70311400-70312400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:70311400-70312400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:70311400-70313800	Enhancers	Brain Angular Gyrus	brain
8	chr1:70311600-70311800	Enhancers	Brain Substantia Nigra	brain
9	chr1:70311600-70312000	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:70311600-70312600	Enhancers	Brain Inferior Temporal Lobe	brain

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