Variant report

Variant	rs12035080
Chromosome Location	chr1:70326207-70326208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1015819	1.00[MEX][hapmap]
rs10889862	0.83[CHD][hapmap];0.92[JPT][hapmap]
rs10889864	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs11209577	0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap]
rs11209582	0.85[CEU][hapmap]
rs12022612	0.85[CEU][hapmap]
rs12023122	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs12023932	0.85[CEU][hapmap]
rs12024702	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12026306	0.82[CEU][hapmap]
rs12027422	1.00[MEX][hapmap]
rs12027457	0.85[CEU][hapmap]
rs12027907	0.86[JPT][hapmap]
rs12029982	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12030680	0.85[CEU][hapmap]
rs12030875	1.00[MEX][hapmap]
rs12032252	0.85[CEU][hapmap]
rs12032656	0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap]
rs12032951	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs12033628	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs12035355	1.00[MEX][hapmap]
rs12035691	0.85[CEU][hapmap]
rs12037173	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap]
rs12038059	0.82[CEU][hapmap]
rs12040177	1.00[MEX][hapmap]
rs12045140	0.85[CEU][hapmap]
rs12045530	0.85[CEU][hapmap]
rs12046022	1.00[MEX][hapmap]
rs12047337	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12047486	0.85[CEU][hapmap]
rs12049401	0.96[ASN][1000 genomes]
rs1327881	1.00[MEX][hapmap]
rs1410251	0.85[CEU][hapmap]
rs1410252	0.85[CEU][hapmap]
rs1410253	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs17097465	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs17097466	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17131060	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131061	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap]
rs17131066	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs17131088	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs17446829	0.85[CEU][hapmap]
rs17505551	0.85[CEU][hapmap]
rs17505598	0.85[CEU][hapmap]
rs1938581	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3738120	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs3738121	0.91[ASN][1000 genomes]
rs4494098	0.91[ASN][1000 genomes]
rs6658642	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6681560	0.86[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs6694951	0.86[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap]
rs6704345	0.86[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70324800-70328400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:70325200-70328600	Weak transcription	HUVEC	blood vessel

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