Variant report

Variant	rs17131060
Chromosome Location	chr1:70329599-70329600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1015819	0.83[TSI][hapmap]
rs10889862	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs10889864	0.83[TSI][hapmap]
rs11209577	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12024702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12027422	0.83[TSI][hapmap]
rs12027907	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12029982	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12030875	0.83[TSI][hapmap]
rs12032155	0.83[TSI][hapmap]
rs12032656	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12032951	0.83[TSI][hapmap]
rs12033628	0.83[TSI][hapmap]
rs12035080	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12035355	0.83[TSI][hapmap]
rs12035905	0.83[TSI][hapmap]
rs12037173	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs12040177	0.83[TSI][hapmap]
rs12046022	0.83[TSI][hapmap]
rs12047337	0.92[ASN][1000 genomes]
rs12047627	1.00[MEX][hapmap];0.83[TSI][hapmap]
rs12049401	1.00[ASN][1000 genomes]
rs1327881	0.83[TSI][hapmap]
rs1410253	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17097465	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs17097466	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs17131061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs17131066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17131088	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1938581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3738120	0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3738121	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4494098	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6658642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6681560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6694951	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs6704345	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs8179494	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70328600-70329600	Enhancers	HUVEC	blood vessel

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