Variant report

Variant	rs10889863
Chromosome Location	chr1:70377027-70377028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10399623	0.90[YRI][hapmap]
rs11802766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12059668	0.96[EUR][1000 genomes]
rs12062605	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs12063369	1.00[TSI][hapmap]
rs12066962	0.81[AFR][1000 genomes]
rs12074727	0.92[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap]
rs12075318	0.85[TSI][hapmap]
rs12086732	1.00[TSI][hapmap]
rs12088269	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap]
rs17131037	0.82[EUR][1000 genomes]
rs17131038	0.90[YRI][hapmap]
rs17131039	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17131072	0.82[EUR][1000 genomes]
rs17131125	1.00[CEU][hapmap]
rs41440946	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap]
rs6695130	0.82[EUR][1000 genomes]
rs7554827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs7556220	1.00[GIH][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70375800-70378400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:70376400-70378200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:70376400-70378600	Enhancers	Hela-S3	cervix
4	chr1:70376600-70377200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:70377000-70377400	Enhancers	NHLF	lung
6	chr1:70377000-70378200	Enhancers	Adipose Nuclei	Adipose
7	chr1:70377000-70381200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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