Variant report

Variant	rs17131125
Chromosome Location	chr1:70485919-70485920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10889863	1.00[CEU][hapmap]
rs11802766	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12060100	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12062605	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066962	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074727	1.00[CEU][hapmap]
rs12088269	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41440946	1.00[CEU][hapmap]
rs55858638	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56278841	0.95[EUR][1000 genomes]
rs58574417	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66724614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67032718	1.00[EUR][1000 genomes]
rs72676873	0.95[EUR][1000 genomes]
rs72676875	0.95[EUR][1000 genomes]
rs72676880	0.95[EUR][1000 genomes]
rs7554827	1.00[CEU][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv871018	chr1:70450024-70496379	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461795	chr1:70475794-70551339	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546453	chr1:70475794-70551339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70464800-70509000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70478000-70503800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:70479400-70515600	Weak transcription	Fetal Brain Male	brain
4	chr1:70479800-70503800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:70481800-70488400	Weak transcription	Fetal Brain Female	brain
6	chr1:70485200-70488400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:70485200-70503800	Weak transcription	Brain Germinal Matrix	brain
8	chr1:70485600-70503800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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