Variant report

Variant	rs11802766
Chromosome Location	chr1:70385301-70385302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10399623	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs10889863	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12060100	0.87[AMR][1000 genomes]
rs12062605	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12066962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074727	1.00[CEU][hapmap]
rs12088269	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs17131038	0.90[YRI][hapmap]
rs17131125	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs41440946	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs55858638	0.87[AMR][1000 genomes]
rs58574417	0.87[AMR][1000 genomes]
rs66724614	0.87[AMR][1000 genomes]
rs7554827	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7556220	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70383600-70385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:70385000-70385600	ZNF genes & repeats	Fetal Stomach	stomach
4	chr1:70385000-70385800	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr1:70385000-70388000	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links