Variant report

Variant	rs6424611
Chromosome Location	chr1:70386919-70386920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1023008	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10889860	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1120344	0.83[AMR][1000 genomes]
rs11209557	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11209564	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11209578	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11209579	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11579093	0.87[YRI][hapmap]
rs11583726	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12024338	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12025026	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025637	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12031885	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12039507	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12039534	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12564586	0.87[CEU][hapmap]
rs12725425	0.84[AMR][1000 genomes]
rs12727806	0.82[YRI][hapmap]
rs12730345	0.83[YRI][hapmap]
rs12734666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12751773	0.85[AMR][1000 genomes]
rs12756122	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756253	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1913266	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913270	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938584	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2025895	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2025896	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2421306	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2421307	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2421308	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2421315	0.86[ASN][1000 genomes]
rs2421316	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4623650	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59350933	0.80[AFR][1000 genomes]
rs6424609	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs6424610	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6662513	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6663915	0.87[YRI][hapmap]
rs6665742	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6686752	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6695135	0.82[ASN][1000 genomes]
rs6695450	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6703428	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7512258	0.80[AFR][1000 genomes]
rs7523425	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7530457	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7531255	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7536845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544286	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9787350	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70385000-70388000	Weak transcription	Fetal Brain Female	brain

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