Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:225537288..225539034-chr1:225551951..225554490,2	K562	blood:
2	chr1:225537534..225539602-chr1:225550916..225553451,2	K562	blood:
3	chr1:225552393..225554542-chr1:225560951..225562986,2	K562	blood:
4	chr1:225547542..225550580-chr1:225551460..225555926,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10047221	0.92[ASN][1000 genomes]
rs10495236	0.82[ASN][1000 genomes]
rs10495238	0.91[ASN][1000 genomes]
rs10915814	0.90[ASN][1000 genomes]
rs11580348	0.89[ASN][1000 genomes]
rs11585543	0.85[ASN][1000 genomes]
rs12408441	0.91[ASN][1000 genomes]
rs12408521	0.90[CEU][hapmap]
rs12759119	0.88[CEU][hapmap]
rs1553447	0.88[CEU][hapmap]
rs16844602	0.88[CEU][hapmap]
rs16844689	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16844752	0.91[ASN][1000 genomes]
rs16844770	0.91[ASN][1000 genomes]
rs16844772	0.91[ASN][1000 genomes]
rs34809641	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4459070	0.82[ASN][1000 genomes]
rs4539098	0.91[ASN][1000 genomes]
rs4653418	0.80[ASN][1000 genomes]
rs4653628	0.88[CEU][hapmap]
rs581675	0.88[CEU][hapmap]
rs583098	0.88[CEU][hapmap]
rs58840178	0.87[ASN][1000 genomes]
rs60228869	0.82[ASN][1000 genomes]
rs61850032	0.85[ASN][1000 genomes]
rs638672	0.88[CEU][hapmap]
rs6686051	0.91[ASN][1000 genomes]
rs672951	0.88[CEU][hapmap]
rs674025	0.90[CEU][hapmap]
rs686493	0.90[CEU][hapmap]
rs7523005	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873226	chr1:225347689-225555602	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225551600-225555000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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