Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225539242..225541399-chr1:225541845..225544252,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10047221	0.94[ASN][1000 genomes]
rs10495236	0.84[ASN][1000 genomes]
rs10495238	0.95[ASN][1000 genomes]
rs10915814	0.94[ASN][1000 genomes]
rs11580348	0.94[ASN][1000 genomes]
rs11585543	0.89[ASN][1000 genomes]
rs12408441	0.95[ASN][1000 genomes]
rs12754197	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844689	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16844752	0.95[ASN][1000 genomes]
rs16844770	0.95[ASN][1000 genomes]
rs16844772	0.95[ASN][1000 genomes]
rs4459070	0.86[ASN][1000 genomes]
rs4539098	0.95[ASN][1000 genomes]
rs4653418	0.81[ASN][1000 genomes]
rs58840178	0.91[ASN][1000 genomes]
rs60228869	0.86[ASN][1000 genomes]
rs61850032	0.89[ASN][1000 genomes]
rs6686051	0.95[ASN][1000 genomes]
rs7523005	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873226	chr1:225347689-225555602	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225541800-225544400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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