Variant report

Variant	rs12763738
Chromosome Location	chr10:45870020-45870021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45869730..45871343-chr10:45873216..45875986,2	K562	blood:
2	chr10:45869704..45872011-chr10:45875506..45878430,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10900212	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239486	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239492	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239497	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11239505	0.93[ASN][1000 genomes]
rs11511619	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511620	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11517281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523408	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12354742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12354994	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12356109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12358647	0.91[ASN][1000 genomes]
rs12359299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12359302	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360250	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12762303	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764778	0.99[ASN][1000 genomes]
rs12768010	0.98[ASN][1000 genomes]
rs12774369	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12783095	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12783182	0.90[ASN][1000 genomes]
rs12783895	0.80[ASN][1000 genomes]
rs17157728	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17157733	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17157736	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1864413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864414	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082108	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2099170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2303885	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2310776	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28395865	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34297550	0.90[ASN][1000 genomes]
rs34462692	0.87[ASN][1000 genomes]
rs34929604	0.80[ASN][1000 genomes]
rs34998367	0.90[ASN][1000 genomes]
rs35001574	0.88[ASN][1000 genomes]
rs35267934	0.90[ASN][1000 genomes]
rs35300270	0.81[ASN][1000 genomes]
rs35536930	0.81[ASN][1000 genomes]
rs35555369	0.83[ASN][1000 genomes]
rs35906360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780894	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780896	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780897	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780898	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780899	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824613	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4986832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987105	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4987106	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55717607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55864145	0.98[ASN][1000 genomes]
rs55965812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55978138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55986122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56150414	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56180358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57063108	0.99[ASN][1000 genomes]
rs57398542	0.89[ASN][1000 genomes]
rs58167894	0.81[ASN][1000 genomes]
rs58238740	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58901177	0.99[ASN][1000 genomes]
rs59514896	0.81[ASN][1000 genomes]
rs60146827	0.81[ASN][1000 genomes]
rs60842538	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6413416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593478	0.86[ASN][1000 genomes]
rs6593482	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66489870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67008983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67491417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7071714	0.90[ASN][1000 genomes]
rs7077891	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7080897	0.81[ASN][1000 genomes]
rs7081004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083500	0.85[ASN][1000 genomes]
rs7084793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085205	0.85[ASN][1000 genomes]
rs7093687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097429	0.81[ASN][1000 genomes]
rs71494771	0.81[ASN][1000 genomes]
rs71494772	0.86[ASN][1000 genomes]
rs71494775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494776	0.92[ASN][1000 genomes]
rs71494779	0.81[ASN][1000 genomes]
rs72561472	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs745986	0.93[ASN][1000 genomes]
rs7896861	0.90[ASN][1000 genomes]
rs7898465	0.90[ASN][1000 genomes]
rs7909740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917687	0.81[ASN][1000 genomes]
rs7918542	0.81[ASN][1000 genomes]
rs7919239	0.82[ASN][1000 genomes]
rs7921503	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12763738	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45867400-45870200	Active TSS	GM12878-XiMat	blood
2	chr10:45868200-45870600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:45868400-45870200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr10:45868400-45870200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:45868400-45870200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:45868400-45870400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr10:45868400-45870400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:45868400-45870600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:45868400-45871000	Active TSS	Brain Substantia Nigra	brain
10	chr10:45868600-45870200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr10:45868600-45870400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:45868600-45870400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:45868600-45870400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:45868600-45870400	Flanking Active TSS	Liver	Liver
15	chr10:45868600-45870400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
16	chr10:45868800-45870200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr10:45868800-45870400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:45868800-45870400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr10:45868800-45870800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
20	chr10:45869000-45870200	Enhancers	Fetal Heart	heart
21	chr10:45869000-45870200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
22	chr10:45869000-45870200	Active TSS	Small Intestine	intestine
23	chr10:45869000-45870400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:45869000-45870400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
25	chr10:45869000-45870400	Bivalent/Poised TSS	Psoas Muscle	Psoas
26	chr10:45869000-45870600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
27	chr10:45869000-45870800	Flanking Bivalent TSS/Enh	Placenta	Placenta
28	chr10:45869000-45871800	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr10:45869200-45870200	Active TSS	Primary B cells from peripheral blood	blood
30	chr10:45869200-45870200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr10:45869200-45870200	Bivalent/Poised TSS	A549	lung
32	chr10:45869200-45870200	Flanking Bivalent TSS/Enh	HMEC	breast
33	chr10:45869200-45870400	Active TSS	Brain Angular Gyrus	brain
34	chr10:45869200-45871600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
35	chr10:45869400-45870200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:45869400-45870200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr10:45869400-45870200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:45869400-45870200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:45869400-45870200	Active TSS	Colon Smooth Muscle	Colon
40	chr10:45869400-45870200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr10:45869400-45871000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
42	chr10:45869600-45870200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:45869600-45870200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:45869600-45870200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:45869600-45870200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:45869600-45870200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:45869600-45870200	Flanking Active TSS	Left Ventricle	heart
48	chr10:45869600-45870200	Flanking Active TSS	Ovary	ovary
49	chr10:45869600-45870200	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
50	chr10:45869600-45870400	Bivalent Enhancer	Fetal Stomach	stomach

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