Variant report

Variant	rs6593478
Chromosome Location	chr10:45804169-45804170
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:45804154-45804516	K562	blood:	n/a	n/a
2	GATA3	chr10:45804104-45804587	MCF-7	breast:	n/a	chr10:45804359-45804368
3	RAD21	chr10:45804169-45804686	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr10:45804156-45804609	MCF-7	breast:	n/a	n/a
5	GATA1	chr10:45803885-45804942	PBDE	blood:	n/a	chr10:45804359-45804368 chr10:45804895-45804905
6	TEAD4	chr10:45804093-45804701	K562	blood:	n/a	n/a
7	JUND	chr10:45804158-45804561	K562	blood:	n/a	n/a
8	RCOR1	chr10:45804153-45804590	K562	blood:	n/a	n/a
9	TBL1XR1	chr10:45804144-45804557	K562	blood:	n/a	n/a
10	EP300	chr10:45804110-45804536	K562	blood:	n/a	n/a
11	RAD21	chr10:45804101-45804637	HCT-116	colon:	n/a	n/a
12	RAD21	chr10:45804167-45804605	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
OR13A1	TF binding region

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10900212	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11239486	0.82[ASN][1000 genomes]
rs11239491	0.86[ASN][1000 genomes]
rs11239492	0.83[ASN][1000 genomes]
rs11239497	0.84[ASN][1000 genomes]
rs11511619	0.86[ASN][1000 genomes]
rs11511620	0.83[ASN][1000 genomes]
rs11517281	0.86[ASN][1000 genomes]
rs11523408	0.86[ASN][1000 genomes]
rs12354712	0.83[ASN][1000 genomes]
rs12354742	0.83[ASN][1000 genomes]
rs12354994	0.80[ASN][1000 genomes]
rs12356109	0.86[ASN][1000 genomes]
rs12359299	0.84[ASN][1000 genomes]
rs12359302	0.83[ASN][1000 genomes]
rs12360250	0.83[ASN][1000 genomes]
rs12762303	0.86[ASN][1000 genomes]
rs12763738	0.86[ASN][1000 genomes]
rs12764778	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12768010	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12774369	0.84[ASN][1000 genomes]
rs12783095	0.84[ASN][1000 genomes]
rs12783182	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17157728	0.84[ASN][1000 genomes]
rs17157733	0.81[ASN][1000 genomes]
rs17157736	0.84[ASN][1000 genomes]
rs1864412	0.85[ASN][1000 genomes]
rs1864413	0.86[ASN][1000 genomes]
rs1864414	0.86[ASN][1000 genomes]
rs2082108	0.85[ASN][1000 genomes]
rs2099170	0.86[ASN][1000 genomes]
rs2310776	0.84[ASN][1000 genomes]
rs28395865	0.82[ASN][1000 genomes]
rs34297550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34462692	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34998367	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35001574	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35267934	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35555369	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35745197	0.80[EUR][1000 genomes]
rs35906360	0.85[ASN][1000 genomes]
rs3780894	0.84[ASN][1000 genomes]
rs3780896	0.84[ASN][1000 genomes]
rs3780897	0.84[ASN][1000 genomes]
rs3780898	0.84[ASN][1000 genomes]
rs3780899	0.84[ASN][1000 genomes]
rs3824613	0.84[ASN][1000 genomes]
rs4986832	0.86[ASN][1000 genomes]
rs4987105	0.86[ASN][1000 genomes]
rs4987106	0.82[ASN][1000 genomes]
rs55717607	0.86[ASN][1000 genomes]
rs55787481	0.83[ASN][1000 genomes]
rs55864145	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55965812	0.85[ASN][1000 genomes]
rs55978138	0.85[ASN][1000 genomes]
rs55986122	0.85[ASN][1000 genomes]
rs56150414	0.85[ASN][1000 genomes]
rs56180358	0.84[ASN][1000 genomes]
rs57063108	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57398542	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58167894	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58238740	0.84[ASN][1000 genomes]
rs58901177	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60842538	0.84[ASN][1000 genomes]
rs6413416	0.86[ASN][1000 genomes]
rs6593482	0.86[ASN][1000 genomes]
rs66489870	0.86[ASN][1000 genomes]
rs67008983	0.85[ASN][1000 genomes]
rs67491417	0.83[ASN][1000 genomes]
rs7071714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075460	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7077891	0.84[ASN][1000 genomes]
rs7081004	0.86[ASN][1000 genomes]
rs7083500	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7084793	0.86[ASN][1000 genomes]
rs7085205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093687	0.86[ASN][1000 genomes]
rs71494764	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71494771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71494772	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs71494775	0.86[ASN][1000 genomes]
rs71494776	0.80[ASN][1000 genomes]
rs72561472	0.82[ASN][1000 genomes]
rs7896861	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7909740	0.86[ASN][1000 genomes]
rs7909768	0.86[ASN][1000 genomes]
rs7913488	0.86[ASN][1000 genomes]
rs7921503	0.86[ASN][1000 genomes]
rs9663661	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45801200-45804600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:45802400-45804400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:45802800-45804200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:45803200-45804200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:45803200-45804200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:45803200-45804200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:45803800-45805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:45804000-45804400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr10:45804000-45804800	Enhancers	K562	blood
10	chr10:45804000-45805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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