Variant report

Variant	rs72561472
Chromosome Location	chr10:45869700-45869701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10900212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11239486	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11239491	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239492	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11239497	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11239505	0.90[ASN][1000 genomes]
rs11511619	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11511620	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11517281	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11523408	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12354712	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12354742	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12354994	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12356109	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356140	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12358647	0.87[ASN][1000 genomes]
rs12359299	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359302	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12360250	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12762303	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12763738	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12764778	0.95[ASN][1000 genomes]
rs12768010	0.94[ASN][1000 genomes]
rs12774369	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12783095	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12783182	0.87[ASN][1000 genomes]
rs17157728	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17157733	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17157736	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1864412	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864413	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1864414	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082108	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2099170	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303885	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2310776	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28395865	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34297550	0.87[ASN][1000 genomes]
rs34462692	0.83[ASN][1000 genomes]
rs34998367	0.87[ASN][1000 genomes]
rs35001574	0.84[ASN][1000 genomes]
rs35267934	0.87[ASN][1000 genomes]
rs35536930	0.80[ASN][1000 genomes]
rs35906360	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3780894	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780896	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780897	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780898	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780899	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824613	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4986832	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4987105	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4987106	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55717607	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55787481	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55864145	0.94[ASN][1000 genomes]
rs55965812	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55978138	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55986122	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56150414	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56180358	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57063108	0.95[ASN][1000 genomes]
rs57398542	0.85[ASN][1000 genomes]
rs58238740	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58901177	0.95[ASN][1000 genomes]
rs60842538	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6413416	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593478	0.82[ASN][1000 genomes]
rs6593482	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66489870	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67008983	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67491417	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071714	0.87[ASN][1000 genomes]
rs7077891	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7081004	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083500	0.81[ASN][1000 genomes]
rs7084793	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085205	0.81[ASN][1000 genomes]
rs7093687	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71494772	0.83[ASN][1000 genomes]
rs71494775	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71494776	0.89[ASN][1000 genomes]
rs745986	0.90[ASN][1000 genomes]
rs7896861	0.87[ASN][1000 genomes]
rs7898465	0.87[ASN][1000 genomes]
rs7909740	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909768	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913488	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7918542	0.80[ASN][1000 genomes]
rs7919239	0.81[ASN][1000 genomes]
rs7921503	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9663661	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45867400-45870200	Active TSS	GM12878-XiMat	blood
2	chr10:45868200-45870600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:45868400-45869800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr10:45868400-45870000	Active TSS	Thymus	Thymus
5	chr10:45868400-45870200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:45868400-45870200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:45868400-45870200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:45868400-45870400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:45868400-45870400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:45868400-45870600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:45868400-45871000	Active TSS	Brain Substantia Nigra	brain
12	chr10:45868600-45870000	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr10:45868600-45870000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
14	chr10:45868600-45870200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr10:45868600-45870400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:45868600-45870400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr10:45868600-45870400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:45868600-45870400	Flanking Active TSS	Liver	Liver
19	chr10:45868600-45870400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
20	chr10:45868800-45869800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
21	chr10:45868800-45869800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:45868800-45870000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:45868800-45870000	Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr10:45868800-45870000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
25	chr10:45868800-45870200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr10:45868800-45870400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:45868800-45870400	Bivalent Enhancer	Fetal Brain Male	brain
28	chr10:45868800-45870800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
29	chr10:45869000-45869800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:45869000-45869800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:45869000-45869800	Active TSS	Aorta	Aorta
32	chr10:45869000-45869800	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr10:45869000-45869800	Active TSS	Hela-S3	cervix
34	chr10:45869000-45870000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:45869000-45870000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chr10:45869000-45870200	Enhancers	Fetal Heart	heart
37	chr10:45869000-45870200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
38	chr10:45869000-45870200	Active TSS	Small Intestine	intestine
39	chr10:45869000-45870400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:45869000-45870400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr10:45869000-45870400	Bivalent/Poised TSS	Psoas Muscle	Psoas
42	chr10:45869000-45870600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
43	chr10:45869000-45870800	Flanking Bivalent TSS/Enh	Placenta	Placenta
44	chr10:45869000-45871800	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr10:45869200-45869800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:45869200-45869800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
47	chr10:45869200-45869800	Bivalent Enhancer	HUVEC	blood vessel
48	chr10:45869200-45870000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
49	chr10:45869200-45870200	Active TSS	Primary B cells from peripheral blood	blood
50	chr10:45869200-45870200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain

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