Variant report

Variant	rs12767191
Chromosome Location	chr10:99256163-99256164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99256102-99256231	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
2	chr10:99254835..99256478-chr10:99258857..99262357,3	MCF-7	breast:
3	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
4	chr10:99255036..99258001-chr10:99391751..99393858,2	K562	blood:
5	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
6	chr10:99230735..99233202-chr10:99255020..99257889,3	MCF-7	breast:
7	chr10:99249819..99251861-chr10:99254679..99256807,3	MCF-7	breast:

No data

Variant related genes	Relation type
UBTD1	TF binding region
ENSG00000171311	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000171160	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10786352	0.90[ASN][1000 genomes]
rs10882947	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189247	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11189268	0.83[AFR][1000 genomes]
rs11591644	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592973	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593116	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11595151	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598766	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812581	0.89[ASN][1000 genomes]
rs29001259	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs29001262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29001315	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34041345	0.89[ASN][1000 genomes]
rs34312169	0.89[ASN][1000 genomes]
rs34452362	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34759540	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073097	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7077917	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7090595	0.89[ASN][1000 genomes]
rs7090757	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901283	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872106	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
4	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:99244200-99257200	Weak transcription	Placenta	Placenta
7	chr10:99250600-99256800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:99250800-99256600	Weak transcription	NHLF	lung
9	chr10:99250800-99256800	Weak transcription	Aorta	Aorta
10	chr10:99250800-99257400	Weak transcription	Ovary	ovary
11	chr10:99251000-99256800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:99251200-99256400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:99251200-99256600	Weak transcription	Liver	Liver
14	chr10:99251200-99256800	Weak transcription	HSMMtube	muscle
15	chr10:99252200-99257200	Enhancers	Brain Cingulate Gyrus	brain
16	chr10:99253000-99256200	Enhancers	Left Ventricle	heart
17	chr10:99253000-99256600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:99253000-99257000	Enhancers	Brain Anterior Caudate	brain
19	chr10:99253000-99257200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:99253000-99257200	Enhancers	Right Atrium	heart
21	chr10:99253200-99257200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:99253400-99256200	Weak transcription	HSMM	muscle
23	chr10:99253400-99257000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:99253400-99257200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:99253400-99257200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:99253600-99256200	Enhancers	Gastric	stomach
27	chr10:99253600-99256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:99253600-99256800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:99253600-99257000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:99253600-99257200	Enhancers	Fetal Heart	heart
31	chr10:99253800-99256400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:99253800-99256800	Enhancers	Brain Germinal Matrix	brain
33	chr10:99253800-99257200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr10:99253800-99257200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:99254000-99256200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:99254000-99256200	Genic enhancers	Fetal Muscle Leg	muscle
37	chr10:99254000-99256200	Enhancers	Pancreas	Pancrea
38	chr10:99254000-99256200	Genic enhancers	Dnd41	blood
39	chr10:99254000-99256800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr10:99254000-99256800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr10:99254000-99256800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:99254200-99256400	Weak transcription	A549	lung
43	chr10:99254200-99256800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr10:99254200-99256800	Enhancers	HepG2	liver
45	chr10:99254200-99256800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:99254200-99257200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr10:99254400-99256600	Enhancers	Fetal Brain Female	brain
48	chr10:99254400-99256800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:99254400-99256800	Enhancers	NHEK	skin
50	chr10:99254400-99257200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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