Variant report

Variant	rs7901283
Chromosome Location	chr10:99246181-99246182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99245926..99248075-chr10:99252387..99254399,2	K562	blood:
2	chr10:99245187..99248138-chr10:99256409..99258187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10786352	0.90[ASN][1000 genomes]
rs10882947	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189247	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591644	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592973	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11595151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11598766	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812581	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12767191	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29001259	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs29001262	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29001315	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34041345	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34312169	0.89[ASN][1000 genomes]
rs34452362	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34759540	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073097	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7077917	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7090595	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7090757	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99211000-99246400	Strong transcription	Dnd41	blood
2	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:99233400-99246400	Strong transcription	GM12878-XiMat	blood
9	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
10	chr10:99237800-99248200	Weak transcription	Fetal Heart	heart
11	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
12	chr10:99238200-99249800	Weak transcription	Psoas Muscle	Psoas
13	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:99240800-99249200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:99241000-99250200	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:99241000-99250600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:99241000-99254600	Weak transcription	K562	blood
23	chr10:99241200-99250000	Weak transcription	HSMMtube	muscle
24	chr10:99241200-99250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:99241200-99250400	Weak transcription	Fetal Lung	lung
26	chr10:99241200-99250400	Weak transcription	Gastric	stomach
27	chr10:99241200-99250400	Weak transcription	Ovary	ovary
28	chr10:99241200-99253600	Weak transcription	Fetal Kidney	kidney
29	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
30	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
31	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
32	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:99241400-99250400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:99241400-99250400	Weak transcription	Aorta	Aorta
35	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:99241600-99246400	Weak transcription	Hela-S3	cervix
37	chr10:99241800-99248000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:99241800-99248800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:99241800-99252800	Weak transcription	Lung	lung
40	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:99242000-99246200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:99242000-99250400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:99242200-99249200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:99242200-99250200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:99242200-99252600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:99242400-99248800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:99242400-99248800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:99242400-99250200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:99243600-99248400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:99243600-99248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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