Variant report

Variant	rs34452362
Chromosome Location	chr10:99209698-99209699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99205389..99207344-chr10:99208638..99211483,4	MCF-7	breast:
2	chr10:99208835..99213296-chr10:99221079..99225191,5	K562	blood:
3	chr10:99209036..99210641-chr10:99216747..99219503,3	K562	blood:
4	chr10:99205859..99207982-chr10:99208741..99212627,5	K562	blood:
5	chr10:99204257..99208828-chr10:99209002..99214217,10	MCF-7	breast:
6	chr10:99208764..99211398-chr10:99214569..99216426,2	MCF-7	breast:
7	chr10:99205859..99207837-chr10:99208741..99212627,4	K562	blood:

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882947	0.90[AMR][1000 genomes]
rs11591644	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11592973	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11593116	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11595151	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11598766	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11812581	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12767191	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs29001259	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs29001262	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs29001315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34041345	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34759540	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7073097	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077917	0.81[AMR][1000 genomes]
rs7090595	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7090757	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7901283	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs872106	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99206600-99210800	Weak transcription	Esophagus	oesophagus
2	chr10:99206800-99211000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:99206800-99234200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:99207000-99210000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99207000-99210400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:99207000-99210800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:99207200-99210000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:99207200-99210000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:99207200-99210000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:99207200-99210000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:99207200-99210600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:99207200-99210600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:99207200-99210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:99207200-99210800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:99207200-99211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:99207200-99211400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:99207200-99211400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:99207200-99211400	Weak transcription	Primary B cells from cord blood	blood
19	chr10:99207200-99211400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:99207200-99211600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:99207200-99212000	Weak transcription	HSMMtube	muscle
22	chr10:99207200-99212400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:99207200-99214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:99207200-99215200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:99207200-99215400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:99207200-99216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:99207400-99210000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:99207400-99210000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:99207400-99210000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:99207400-99210000	Weak transcription	HMEC	breast
31	chr10:99207400-99210200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:99207400-99210200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:99207400-99210200	Weak transcription	Psoas Muscle	Psoas
34	chr10:99207400-99210400	Weak transcription	Brain Substantia Nigra	brain
35	chr10:99207400-99210400	Weak transcription	Fetal Brain Female	brain
36	chr10:99207400-99210400	Weak transcription	Fetal Thymus	thymus
37	chr10:99207400-99210400	Weak transcription	Lung	lung
38	chr10:99207400-99210400	Weak transcription	HSMM	muscle
39	chr10:99207400-99210600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:99207400-99210600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:99207400-99210600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:99207400-99210600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:99207400-99210600	Weak transcription	Thymus	Thymus
44	chr10:99207400-99210800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:99207400-99210800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:99207400-99210800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:99207400-99211000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:99207400-99211800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:99207400-99212000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:99207400-99212600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links