Variant report

Variant	rs7077917
Chromosome Location	chr10:99268871-99268872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99260312..99262162-chr10:99268018..99269969,2	MCF-7	breast:
2	chr10:99262328..99265994-chr10:99268306..99271864,5	MCF-7	breast:
3	chr10:99261479..99263816-chr10:99267425..99269402,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10786352	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882952	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882953	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882954	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11189247	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189255	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11591644	0.81[AMR][1000 genomes]
rs11592144	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592973	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11593116	0.81[AMR][1000 genomes]
rs11595151	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11598766	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11812581	0.84[ASN][1000 genomes]
rs12767191	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29001259	0.81[AMR][1000 genomes]
rs29001262	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs29001311	1.00[JPT][hapmap]
rs29001315	0.81[AMR][1000 genomes]
rs34041345	0.84[ASN][1000 genomes]
rs34312169	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs34452362	0.81[AMR][1000 genomes]
rs34759540	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6584123	1.00[CHB][hapmap]
rs7073097	0.81[AMR][1000 genomes]
rs7090595	0.84[ASN][1000 genomes]
rs7090757	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7901283	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872106	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260400-99269400	Weak transcription	Ovary	ovary
3	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:99260600-99270800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:99260600-99271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:99260800-99270400	Weak transcription	Adipose Nuclei	Adipose
8	chr10:99260800-99276800	Weak transcription	HSMM	muscle
9	chr10:99261000-99270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:99262000-99271600	Weak transcription	HepG2	liver
11	chr10:99263400-99271600	Weak transcription	Lung	lung
12	chr10:99263600-99270800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
15	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
16	chr10:99264000-99271200	Weak transcription	Right Atrium	heart
17	chr10:99264000-99271600	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:99264000-99271600	Weak transcription	Right Ventricle	heart
19	chr10:99264200-99271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:99266200-99270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:99266200-99271200	Weak transcription	Left Ventricle	heart
22	chr10:99266200-99271800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:99266200-99272200	Weak transcription	Psoas Muscle	Psoas
24	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:99267600-99269000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:99267600-99269000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:99267600-99269000	Enhancers	Brain Substantia Nigra	brain
29	chr10:99267600-99269200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:99267600-99269400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:99267800-99269000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:99267800-99269000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr10:99267800-99269200	Enhancers	Osteobl	bone
34	chr10:99268000-99269000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:99268200-99270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:99268200-99272400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:99268400-99271600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:99268600-99270600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:99268600-99271200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:99268600-99271200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:99268600-99272000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:99268600-99272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:99268600-99272000	Weak transcription	Brain Anterior Caudate	brain
46	chr10:99268600-99272800	Weak transcription	NHEK	skin
47	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
48	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:99268600-99276600	Weak transcription	HMEC	breast

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