Variant report

Variant	rs12777936
Chromosome Location	chr10:18469956-18469957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12413195	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16916928	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757205	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757206	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757207	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757210	0.95[ASN][1000 genomes]
rs1757211	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779226	0.83[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs1779227	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779228	0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs1779235	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1779238	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1779240	0.95[ASN][1000 genomes]
rs1888693	0.81[TSI][hapmap]
rs7067916	0.95[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12777936	PTPLA	cis	cerebellum	SCAN
rs12777936	NSUN6	cis	Artery Tibial	GTEx
rs12777936	FAM171A1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18467200-18470200	Enhancers	Fetal Stomach	stomach
2	chr10:18467600-18471200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:18467600-18471200	Enhancers	Ovary	ovary
4	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:18469000-18470200	Enhancers	Right Atrium	heart
6	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
7	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:18469400-18470200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr10:18469400-18470200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:18469400-18470400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:18469400-18474400	Weak transcription	Brain Angular Gyrus	brain
12	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
13	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:18469600-18470400	Enhancers	Fetal Heart	heart
15	chr10:18469600-18470800	Weak transcription	Fetal Lung	lung
16	chr10:18469600-18471200	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:18469600-18472200	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:18469600-18472400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:18469600-18473600	Weak transcription	Pancreas	Pancrea
20	chr10:18469600-18474600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:18469600-18474800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:18469800-18471000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:18469800-18471200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart

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