Variant report

Variant	rs1779226
Chromosome Location	chr10:18472977-18472978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12413195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12777936	0.83[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs16916928	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1757205	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1757206	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757207	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757210	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757211	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779227	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779228	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779235	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1779238	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1779240	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067916	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1779226	NSUN6	cis	Artery Tibial	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18474400	Weak transcription	Brain Angular Gyrus	brain
5	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
6	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:18469600-18473600	Weak transcription	Pancreas	Pancrea
8	chr10:18469600-18474600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:18469600-18474800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart
13	chr10:18470200-18473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
16	chr10:18470400-18474400	Weak transcription	Fetal Heart	heart
17	chr10:18471000-18474000	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:18471200-18473600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:18471200-18473600	Weak transcription	Ovary	ovary
20	chr10:18471200-18473800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
22	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
23	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:18472200-18473200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:18472800-18473600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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